Uncategorized

Other Tools

Created txt files of the network, removing the semantics:

  • 1 File seperated by spaces
  • 1 File separataed by tabs

In the format:

node# relation_type node#

Round the Twist

Going around in circles today trying to get Concept ‘proper’ names for compounds (i.e. Cholic Acid), blast scores etc…

Iterator Solved

The iterator problem has been solved by updating the version of ondex-mini to the latest version on the nexus repository.

Ondex output

Output

Ondex output

Some Output

Iterating ONDEXView

  • Extracted debugger version of Ondex-mini
  • Put emanticmotif-0.1.1-SNAPSHOT-jar-with-dependencies.jar in plugin folder
  • Created test.xml workflow
  • oxl parser worked but semanticmotif.Filter failed – Unable to iterate through items : ONDEXIterator/Iterator is broken/missing.


relationview.Iterator().get(i);
realationview.getEntity(i);

NoSuchMethodError.